C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000018822 rps15a-002 ENSDARG00000010160 7955 - 3:26666380-26668188 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENSDART00000018822
Transcript ID Heart Kidney
ENSDART00000018822 0.338±0.00 0.692±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QM CIL_0003QM_0001 CGP 3:26492909-26672111

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322989 RPS15A-001 protein_coding Homo_sapiens 1e-39 169
ENST00000403958 RP3-340B19.2-001 processed_pseudogene Homo_sapiens 8e-40 167
ENST00000407291 RP1-276J11.2-001 processed_pseudogene Homo_sapiens 4e-18 95
ENST00000413110 RPS15AP38-001 processed_pseudogene Homo_sapiens 1e-37 159
ENST00000419498 RPS15AP12-001 processed_pseudogene Homo_sapiens 3e-34 148
ENST00000419621 RPS15AP40-001 processed_pseudogene Homo_sapiens 2e-31 139
ENST00000428212 AC093106.6-001 processed_pseudogene Homo_sapiens 8e-20 100
ENST00000457423 RPS15AP1-001 processed_pseudogene Homo_sapiens 2e-36 156
ENST00000472521 RPS15AP16-001 processed_pseudogene Homo_sapiens 0.000000000001 77
ENST00000484967 RP11-53I6.1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000489168 RPS15AP25-001 processed_pseudogene Homo_sapiens 4e-33 145
ENST00000492525 RPS15AP24-001 processed_pseudogene Homo_sapiens 4e-38 161
ENST00000497800 RPS15AP3-001 processed_pseudogene Homo_sapiens 0.000000000000002 86
ENST00000562935 RPS15A-004 nonsense_mediated_decay Homo_sapiens 3e-40 169
ENST00000563390 RPS15A-002 protein_coding Homo_sapiens 3e-40 169
ENST00000563579 RPS15A-007 protein_coding Homo_sapiens 1e-27 126
ENST00000565420 RPS15A-005 protein_coding Homo_sapiens 5e-40 169
ENST00000569365 RPS15A-011 nonsense_mediated_decay Homo_sapiens 3e-40 169
ENST00000572008 RPS15A-013 nonsense_mediated_decay Homo_sapiens 5e-40 169
ENST00000574723 RPS15A-009 nonsense_mediated_decay Homo_sapiens 8.99999e-40 167
ENST00000575669 RPS15A-003 processed_transcript Homo_sapiens 1e-26 126
ENST00000576008 RPS15A-010 nonsense_mediated_decay Homo_sapiens 9.99995e-41 171
ENST00000576436 RPS15A-012 protein_coding Homo_sapiens 8e-27 126
ENST00000594193 RPS15AP11-001 processed_pseudogene Homo_sapiens 5e-32 141

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