C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000128613 rps15a-001 ENSDARG00000010160 7955 - 3:26666187-26672111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000128613
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000128613 95.297±92.06 488.846±499.90 346.212±484.88 418.285±0.00 429.841±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QM CIL_0003QM_0001 CGP 3:26492909-26672111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0007420 IMP brain development
GO:0009790 IMP embryo development
GO:0030529 IEA ribonucleoprotein complex
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106588 Rps15a-004 protein_coding Mus_musculus 0 385
ENSMUST00000106590 Rps15a-005 protein_coding Mus_musculus 0 296
ENSMUST00000117914 Rps15a-ps8-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000128482 Rps15a-003 protein_coding Mus_musculus 0 219
ENSMUST00000131374 Rps15a-001 protein_coding Mus_musculus 0 385
ENSMUST00000131840 Rps15a-002 protein_coding Mus_musculus 0 211
ENSMUST00000134270 Rps15a-006 retained_intron Mus_musculus 0 254
ENSMUST00000172457 Rps15a-201 protein_coding Mus_musculus 0 385
ENST00000322989 RPS15A-001 protein_coding Homo_sapiens 0 375
ENST00000403958 RP3-340B19.2-001 processed_pseudogene Homo_sapiens 0 351
ENST00000407291 RP1-276J11.2-001 processed_pseudogene Homo_sapiens 0 235
ENST00000413110 RPS15AP38-001 processed_pseudogene Homo_sapiens 0 327
ENST00000419498 RPS15AP12-001 processed_pseudogene Homo_sapiens 0 327
ENST00000419621 RPS15AP40-001 processed_pseudogene Homo_sapiens 0 302
ENST00000428212 AC093106.6-001 processed_pseudogene Homo_sapiens 0 252
ENST00000436276 RPS15AP5-001 processed_pseudogene Homo_sapiens 0 289
ENST00000451332 RP5-1174J21.2-001 processed_pseudogene Homo_sapiens 0 228
ENST00000457423 RPS15AP1-001 processed_pseudogene Homo_sapiens 0 346
ENST00000469929 RP11-1348G14.1-001 processed_pseudogene Homo_sapiens 0 239
ENST00000472521 RPS15AP16-001 processed_pseudogene Homo_sapiens 1e-23 113
ENST00000484967 RP11-53I6.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000489168 RPS15AP25-001 processed_pseudogene Homo_sapiens 0 257
ENST00000492022 RPS15AP36-001 processed_pseudogene Homo_sapiens 0 213
ENST00000492525 RPS15AP24-001 processed_pseudogene Homo_sapiens 0 355
ENST00000497800 RPS15AP3-001 processed_pseudogene Homo_sapiens 0 189
ENST00000562935 RPS15A-004 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000563390 RPS15A-002 protein_coding Homo_sapiens 0 387
ENST00000563579 RPS15A-007 protein_coding Homo_sapiens 1e-27 126
ENST00000565420 RPS15A-005 protein_coding Homo_sapiens 0 375
ENST00000567078 RP11-1035H13.3-001 protein_coding Homo_sapiens 0 211
ENST00000569083 RPS15A-006 protein_coding Homo_sapiens 0 254
ENST00000569365 RPS15A-011 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000572008 RPS15A-013 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000574723 RPS15A-009 nonsense_mediated_decay Homo_sapiens 1.99993e-41 172
ENST00000575669 RPS15A-003 processed_transcript Homo_sapiens 1e-26 126
ENST00000576008 RPS15A-010 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000576436 RPS15A-012 protein_coding Homo_sapiens 0 211
ENST00000594193 RPS15AP11-001 processed_pseudogene Homo_sapiens 0 348

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