C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000459748 RP11-466H18.1-001 ENSG00000244398 9606 - 11:16974693-16975013 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000459748
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000459748 0.105±0.00 1.622±0.00 12.447±0.00 15.361±0.00 12.485±0.00 4.487±0.00 7.347±0.00 18.041±0.00 12.962±0.00 6.839±0.00 15.075±11.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000836 CIL_000836_0001 VISTA 11:16591589-17196198
CIL_0003ZQ CIL_0003ZQ_0001 CGP 11:16613132-17014443
CIL_0003ZX CIL_0003ZX_0001 CGP 11:16778295-17077787

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 466
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 462
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 459
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 455
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 438
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000174479 Dtnb-005 protein_coding Mus_musculus 0 366
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 230
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 0 226

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