C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 snRNP-associated SURP domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000463563 U2SURP-004 ENSG00000163714 9606 + 3:143001623-143057653 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000463563
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000463563 2.152±0.00 2.475±0.00 2.329±0.00 3.079±1.06 2.869±1.71 2.355±0.00 1.916±0.00 2.038±0.00 2.912±1.03 3.249±0.71 2.311±0.95 4.392±1.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079659 U2surp-002 protein_coding Mus_musculus 0 3145
ENSMUST00000078374 U2surp-001 protein_coding Mus_musculus 0 2937
ENSMUST00000191213 U2surp-009 nonsense_mediated_decay Mus_musculus 0 2582
ENSMUST00000185515 U2surp-005 protein_coding Mus_musculus 0 680
ENSDART00000132651 u2surp-001 protein_coding Danio_rerio 0 420
ENSMUST00000186139 U2surp-007 retained_intron Mus_musculus 0 364
ENSDART00000087714 u2surp-201 protein_coding Danio_rerio 0 342
ENSMUST00000190019 U2surp-006 protein_coding Mus_musculus 0 254
ENSDART00000132854 u2surp-002 protein_coding Danio_rerio 0 224
ENSMUST00000186076 U2surp-004 retained_intron Mus_musculus 2e-35 156
ENSMUST00000188017 U2surp-008 retained_intron Mus_musculus 0.000000000000002 90

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