C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPEG complex locus
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464989 SPEG-002 ENSG00000072195 9606 + 2:219443674-219466861 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000464989
Transcript ID Ovary
ENST00000464989 0.295±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006O0 CIL_0006O0_0001 CGP 2:219418377-219498287
CIL_0006O1 CIL_0006O1_0001 CGP 2:219434846-219506988

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113590 Speg-002 protein_coding Mus_musculus 0 2852
ENSMUST00000087122 Speg-001 protein_coding Mus_musculus 0 2846
ENSMUST00000137868 Speg-003 protein_coding Mus_musculus 0 2165
ENSMUST00000132222 Speg-004 processed_transcript Mus_musculus 0 1308
ENSMUST00000125118 Speg-007 retained_intron Mus_musculus 0 649
ENSMUST00000122266 Speg-009 protein_coding Mus_musculus 0 545
ENSMUST00000113587 Speg-014 protein_coding Mus_musculus 0 545
ENSMUST00000113588 Speg-013 protein_coding Mus_musculus 0 545
ENSMUST00000113589 Speg-008 protein_coding Mus_musculus 0 545
ENSMUST00000132228 Speg-011 nonsense_mediated_decay Mus_musculus 0 545
ENSMUST00000148515 Speg-006 protein_coding Mus_musculus 0 508
ENSMUST00000125306 Speg-012 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000146705 Speg-005 processed_transcript Mus_musculus 0 379

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