C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468221 SLC11A1-009 ENSG00000018280 9606 + 2:218382029-218396027 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLiverOvaryPlacentaENST00000468221
Transcript ID Adrenal Brain Breast Liver Ovary Placenta
ENST00000468221 0.456±0.00 1.601±0.00 0.301±0.00 0.186±0.00 0.270±0.11 0.176±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054V CIL_00054V_0001 CGP 2:218356856-218396894
CIL_0005VF CIL_0005VF_0001 CGP 2:218382029-218405941

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187516 Slc11a1-011 protein_coding Mus_musculus 0 933
ENSMUST00000027368 Slc11a1-001 protein_coding Mus_musculus 0 928
ENSMUST00000147233 Slc11a1-002 retained_intron Mus_musculus 0 928
ENSMUST00000136786 Slc11a1-004 processed_transcript Mus_musculus 0 640
ENSMUST00000131511 Slc11a1-003 retained_intron Mus_musculus 0 442
ENSMUST00000133896 Slc11a1-007 retained_intron Mus_musculus 0 372
ENSMUST00000155865 Slc11a1-006 processed_transcript Mus_musculus 0 250
ENSMUST00000127487 Slc11a1-008 retained_intron Mus_musculus 0 219
ENSMUST00000149166 Slc11a1-009 processed_transcript Mus_musculus 0 217
ENSMUST00000135137 Slc11a1-005 processed_transcript Mus_musculus 0.0000000000005 82
ENSMUST00000186569 Ndufs1-004 retained_intron Mus_musculus 0.0001 55

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