C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 2 open reading frame 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470096 C2orf42-015 ENSG00000115998 9606 - 2:70181630-70248615 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133753 C87436-005 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000113698 C87436-004 protein_coding Mus_musculus 0 453
ENSMUST00000141972 C87436-003 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000113700 C87436-002 protein_coding Mus_musculus 0 453
ENSMUST00000050497 C87436-001 protein_coding Mus_musculus 0 453
ENSMUST00000148728 Tia1-012 processed_transcript Mus_musculus 9.99995e-41 171
ENSMUST00000139928 Tia1-014 processed_transcript Mus_musculus 9.99995e-41 171
ENSMUST00000141960 Tia1-006 retained_intron Mus_musculus 9.99995e-41 171
ENSMUST00000154983 Tia1-004 processed_transcript Mus_musculus 9.99995e-41 171
ENSMUST00000095753 Tia1-001 protein_coding Mus_musculus 9.99995e-41 171
ENSMUST00000095754 Tia1-010 protein_coding Mus_musculus 9.99995e-41 171
ENSMUST00000095752 Tia1-003 protein_coding Mus_musculus 3e-40 169
ENSMUST00000130967 Tia1-002 protein_coding Mus_musculus 1e-39 167
ENSMUST00000154438 Tia1-022 processed_transcript Mus_musculus 6e-38 161
ENSMUST00000113713 Tia1-007 protein_coding Mus_musculus 1e-34 150
ENSMUST00000143718 Tia1-013 processed_transcript Mus_musculus 1e-34 150
ENSMUST00000113712 Tia1-005 nonsense_mediated_decay Mus_musculus 1e-34 150
ENSMUST00000156762 Tia1-017 processed_transcript Mus_musculus 1e-34 150
ENSMUST00000134142 Tia1-008 retained_intron Mus_musculus 2e-32 143
ENSMUST00000113708 Tia1-009 protein_coding Mus_musculus 0.00000000000005 82

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