C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fragile X mental retardation, autosomal homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472339 FXR1-006 ENSG00000114416 9606 + 3:180912678-180976553 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000472339
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000472339 8.644±0.00 6.649±0.00 5.373±1.79 9.388±0.23 4.201±0.00 12.274±7.08 5.656±0.82 6.072±2.98 7.577±0.00 38.212±20.36 8.803±2.36 8.799±3.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0001 VISTA 3:180418639-181020170
CIL_00081O CIL_00081O_0001 VISTA 3:180444037-181045086
CIL_0001FQ CIL_0001FQ_0001 CGP 3:180602130-180871005
CIL_0001FR CIL_0001FR_0001 CGP 3:180602858-180982753
CIL_0007MF CIL_0007MF_0001 UCNEbase 3:180719005-182597004
CIL_0008UV CIL_0008UV_0001 VISTA 3:180755851-181358014

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001620 Fxr1-201 protein_coding Mus_musculus 0 2676
ENSMUST00000167354 Fxr1-202 protein_coding Mus_musculus 0 1760
ENSMUST00000011029 Dnajc19-001 protein_coding Mus_musculus 6e-33 147

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