C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472863 HOXB3-003 ENSG00000120093 9606 - 17:48549812-48590241 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000472863
Transcript ID Ovary
ENST00000472863 8.122±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEP angiogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0 1644
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0 1620
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0 268
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 0 268
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 0 268
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 0 268
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 0 268
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 0 268
ENSMUST00000123091 Hoxb3-003 protein_coding Mus_musculus 3e-35 154
ENSMUST00000143462 Hoxb3-004 processed_transcript Mus_musculus 1e-34 152
ENSMUST00000123805 Hoxb1-002 processed_transcript Mus_musculus 0.00000000000004 84
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 0.00000000000004 84

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