C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 28230
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053932 HOXD3-001 ENSMUSG00000100642 10090 + 2:74726728-74747918 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000053932
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000053932 4.022±1.86 3.482±0.26 6.860±0.33 1.570±0.48 1.064±0.33 0.078±0.02 4.344±0.88 0.013±0.01 0.095±0.02 0.212±0.06 5.706±1.66 0.612±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442
CIL_0006SE CIL_0006SE_0002 CGP 2:74711927-74748442

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0 231
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 0.0000006 60
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 3e-33 147
ENST00000239144 HOXB8-001 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 8e-27 126
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 5e-29 134
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0 2453
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0 874
ENST00000311626 HOXB3-007 protein_coding Homo_sapiens 0 268
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 0.00000008 64
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 4e-27 128
ENST00000360046 HOXA4-001 protein_coding Homo_sapiens 5e-18 97
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0 2455
ENST00000428284 HOXA4-201 protein_coding Homo_sapiens 5e-18 97
ENST00000432796 HOXD3-002 protein_coding Homo_sapiens 0 453
ENST00000460160 HOXB3-006 protein_coding Homo_sapiens 0 268
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0 3722
ENST00000470495 HOXB3-001 protein_coding Homo_sapiens 0 268
ENST00000472863 HOXB3-003 protein_coding Homo_sapiens 0 268
ENST00000476342 HOXB3-004 protein_coding Homo_sapiens 0 268
ENST00000489475 HOXB3-005 protein_coding Homo_sapiens 0 268
ENST00000490677 HOXB3-008 protein_coding Homo_sapiens 0 268
ENST00000498634 HOXB8-003 protein_coding Homo_sapiens 0.00000000000004 82
ENST00000498678 HOXB3-002 protein_coding Homo_sapiens 0 268
ENST00000511914 HOXA4-004 protein_coding Homo_sapiens 3e-18 97
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 0.0000001 60
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 2e-33 147
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 1e-29 134
ENST00000576562 HOXB8-002 protein_coding Homo_sapiens 0.00000000000006 82
ENST00000610970 HOXA4-202 protein_coding Homo_sapiens 5e-18 97
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 0.0000001 64

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