C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473673 RP11-364M6.1-001 ENSG00000241281 9606 - 4:147425974-147426351 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleTestisENST00000473673
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Testis
ENST00000473673 0.037±0.00 0.038±0.00 0.040±0.00 0.076±0.00 0.175±0.00 0.035±0.00 0.068±0.00 0.139±0.00 0.567±0.00 0.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y8 CIL_0008Y8_0001 VISTA 4:146862811-147463679
CIL_0008FD CIL_0008FD_0001 VISTA 4:146873319-147475305
CIL_0008XF CIL_0008XF_0001 VISTA 4:147181569-147782559
CIL_0008OE CIL_0008OE_0001 VISTA 4:147195167-147795934
CIL_0008H5 CIL_0008H5_0001 VISTA 4:147235170-147835800

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086596 Rpl31-ps9-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000181935 Rpl31-ps8-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000179954 Rpl31-203 protein_coding Mus_musculus 0 427
ENSMUST00000178079 Rpl31-202 protein_coding Mus_musculus 0 427
ENSMUST00000086535 Rpl31-201 protein_coding Mus_musculus 0 427
ENSMUST00000119898 Rpl31-ps11-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000180629 Rpl31-ps7-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000181857 Rpl31-ps15-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000191416 RP23-416O18.2-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000191562 RP24-82I5.2-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000120312 Gm12304-001 processed_pseudogene Mus_musculus 0 202

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