C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086535 Rpl31-201 ENSMUSG00000073702 10090 + 1:39367851-39371908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086535
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086535 47.623±11.31 529.499±27.34 142.116±95.99 44.491±13.32 57.226±24.60 34.580±7.47 60.122±13.48 239.622±236.28 41.529±9.07 102.981±7.29 80.971±92.62 234.526±213.63 35.402±16.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004HI CIL_0004HI_0002 CGP 1:39193731-39371908
CIL_0004HF CIL_0004HF_0002 CGP 1:39367851-39478747

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000149554 rpl31-001 protein_coding Danio_rerio 0 274
ENSDART00000075402 rpl31-201 protein_coding Danio_rerio 0 272
ENSDART00000149851 rpl31-002 protein_coding Danio_rerio 0 272
ENSDART00000148688 rpl31-003 retained_intron Danio_rerio 0 255
ENSDART00000148984 rpl31-004 retained_intron Danio_rerio 1e-22 111
ENST00000264258 RPL31-001 protein_coding Homo_sapiens 0 601
ENST00000406329 RPL31P28-001 processed_pseudogene Homo_sapiens 0 322
ENST00000409000 RPL31-006 protein_coding Homo_sapiens 0 438
ENST00000409028 RPL31-007 protein_coding Homo_sapiens 0 496
ENST00000409038 RPL31-008 protein_coding Homo_sapiens 0 484
ENST00000409320 RPL31-002 protein_coding Homo_sapiens 0 483
ENST00000409650 RPL31-009 protein_coding Homo_sapiens 0 486
ENST00000409711 RPL31-004 protein_coding Homo_sapiens 0 366
ENST00000409733 RPL31-010 protein_coding Homo_sapiens 0 521
ENST00000419276 RPL31-003 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000422565 RPL31P63-001 processed_pseudogene Homo_sapiens 0 449
ENST00000426558 RPL31P11-002 processed_transcript Homo_sapiens 0 484
ENST00000427776 RP11-458F8.3-001 processed_pseudogene Homo_sapiens 0 357
ENST00000431058 RPL31P35-001 processed_pseudogene Homo_sapiens 0 414
ENST00000431088 AC016712.2-001 processed_pseudogene Homo_sapiens 0 460
ENST00000441435 RPL31-011 protein_coding Homo_sapiens 0 399
ENST00000441577 RP11-560I19.2-001 processed_pseudogene Homo_sapiens 0 396
ENST00000447680 RP11-346D6.4-001 processed_pseudogene Homo_sapiens 0 412
ENST00000449702 AC104306.1-001 processed_pseudogene Homo_sapiens 0 375
ENST00000454082 RPL31P11-001 transcribed_processed_pseudogene Homo_sapiens 0 427
ENST00000455434 RP11-420H19.3-001 processed_pseudogene Homo_sapiens 0 374
ENST00000456292 RPL31-005 protein_coding Homo_sapiens 0 462
ENST00000462248 RP11-147I3.1-001 transcribed_processed_pseudogene Homo_sapiens 0 383
ENST00000473673 RP11-364M6.1-001 processed_pseudogene Homo_sapiens 0 427
ENST00000480540 RP11-112J1.1-001 processed_pseudogene Homo_sapiens 0 453
ENST00000482574 RP11-79E3.1-001 processed_pseudogene Homo_sapiens 0 346
ENST00000487111 RP11-147I3.1-003 processed_transcript Homo_sapiens 0 289
ENST00000490759 RPL31P49-001 processed_pseudogene Homo_sapiens 0 429
ENST00000496160 RPL31P61-001 processed_pseudogene Homo_sapiens 0 429
ENST00000498412 RP1-102E24.1-001 processed_pseudogene Homo_sapiens 0 442
ENST00000518463 RP11-267M23.6-001 processed_pseudogene Homo_sapiens 0 324
ENST00000525104 RP11-147I3.1-002 processed_transcript Homo_sapiens 0 401
ENST00000529570 RP11-147I3.1-004 processed_transcript Homo_sapiens 0 401

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