C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 snRNP-associated SURP domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473835 U2SURP-001 ENSG00000163714 9606 + 3:143001539-143060546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000473835
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000473835 1.392±0.00 3.533±0.00 1.238±0.00 2.748±0.48 2.019±0.69 1.286±0.56 0.991±0.11 2.055±0.38 2.716±0.00 1.413±0.73 4.318±0.46 1.517±0.20 2.694±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006396 IEA RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079659 U2surp-002 protein_coding Mus_musculus 0 5070
ENSMUST00000078374 U2surp-001 protein_coding Mus_musculus 0 4468
ENSMUST00000191213 U2surp-009 nonsense_mediated_decay Mus_musculus 0 2582
ENSDART00000132651 u2surp-001 protein_coding Danio_rerio 0 837
ENSDART00000087714 u2surp-201 protein_coding Danio_rerio 0 760
ENSMUST00000185515 U2surp-005 protein_coding Mus_musculus 0 680
ENSMUST00000186139 U2surp-007 retained_intron Mus_musculus 0 364
ENSMUST00000190019 U2surp-006 protein_coding Mus_musculus 0 254
ENSDART00000132854 u2surp-002 protein_coding Danio_rerio 0 224
ENSMUST00000186076 U2surp-004 retained_intron Mus_musculus 8.00001e-42 178
ENSMUST00000188017 U2surp-008 retained_intron Mus_musculus 4e-20 106

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