C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fragile X mental retardation, autosomal homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475315 FXR1-002 ENSG00000114416 9606 + 3:180912491-180976579 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryTestisENST00000475315
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary Testis
ENST00000475315 5.546±0.00 6.853±0.00 9.690±0.00 14.658±0.00 5.165±0.00 6.910±0.00 8.041±0.92 45.509±9.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0001 VISTA 3:180418639-181020170
CIL_00081O CIL_00081O_0001 VISTA 3:180444037-181045086
CIL_0001FQ CIL_0001FQ_0001 CGP 3:180602130-180871005
CIL_0001FR CIL_0001FR_0001 CGP 3:180602858-180982753
CIL_0007MF CIL_0007MF_0001 UCNEbase 3:180719005-182597004
CIL_0008UV CIL_0008UV_0001 VISTA 3:180755851-181358014

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001620 Fxr1-201 protein_coding Mus_musculus 0 2335
ENSMUST00000167354 Fxr1-202 protein_coding Mus_musculus 0 1419
ENSMUST00000011029 Dnajc19-001 protein_coding Mus_musculus 7e-33 147

Loading