C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amylase, alpha 2B (pancreatic)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477657 AMY2B-002 ENSG00000240038 9606 + 1:103553815-103579530 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000477657
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000477657 0.718±0.00 1.732±0.00 1.793±0.00 1.302±0.00 2.854±0.00 1.884±0.42 0.435±0.00 0.632±0.00 0.435±0.00 2.102±0.22 0.364±0.10 0.668±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072Z CIL_00072Z_0002 CGP 1:102876467-103555239
CIL_0005I9 CIL_0005I9_0003 CGP 1:103553815-103625780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004556 IEA alpha-amylase activity
GO:0005975 IEA carbohydrate metabolic process
GO:0043169 IEA cation binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098667 Amy2a2-001 protein_coding Mus_musculus 0 1138
ENSMUST00000179314 Amy2a3-001 protein_coding Mus_musculus 0 1138
ENSMUST00000179568 Amy2a4-001 protein_coding Mus_musculus 0 1138
ENSMUST00000098673 Amy2a5-001 protein_coding Mus_musculus 0 1138
ENSMUST00000120184 Amy2b-001 unprocessed_pseudogene Mus_musculus 0 1101
ENSMUST00000106540 Amy1-002 protein_coding Mus_musculus 0 1072
ENSMUST00000067980 Amy1-001 protein_coding Mus_musculus 0 1072
ENSMUST00000142505 Amy1-003 protein_coding Mus_musculus 0 754
ENSMUST00000132353 Amy2a1-001 protein_coding Mus_musculus 0 719

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