C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478870 AP000797.2-001 ENSG00000239600 9606 - 11:115951105-115951491 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000478870
Transcript ID Testis
ENST00000478870 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080B CIL_00080B_0001 VISTA 11:115352903-115953688
CIL_000803 CIL_000803_0001 VISTA 11:115443250-116048688
CIL_0007JB CIL_0007JB_0007 UCNEbase 11:115489207-116083402

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 388
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 388
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 388
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 361
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 196

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