C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480271 RP11-494M8.1-001 ENSG00000241008 9606 + 11:7783697-7784407 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungMuscleOvaryTestisENST00000480271
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Muscle Ovary Testis
ENST00000480271 0.110±0.00 0.071±0.00 0.272±0.00 0.068±0.00 0.024±0.00 0.093±0.00 0.102±0.00 0.126±0.00 0.051±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0001 VISTA 11:7589795-8192277

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 457
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000121278 Gm13726-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 320
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000188004 RP23-78M21.1-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000187766 RP23-223O13.2-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 6e-39 165
ENSMUST00000117903 Gm8097-001 processed_pseudogene Mus_musculus 9e-37 158
ENSMUST00000184119 Gm27189-001 processed_pseudogene Mus_musculus 0.0000000000002 81
ENSMUST00000119680 Gm15702-001 processed_pseudogene Mus_musculus 0.0000003 60

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