C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily C, polypeptide 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480405 CYP2C19-003 ENSG00000165841 9606 + 10:94762681-94776450 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryTestisENST00000480405
Transcript ID Liver Ovary Testis
ENST00000480405 0.130±0.00 0.434±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H6 CIL_0007H6_0002 CGP 10:94683621-94853073
CIL_0007H6 CIL_0007H6_000A CGP 10:94688154-94853260
CIL_0007H6 CIL_0007H6_0004 CGP 10:94762624-94989390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087234 Cyp2c66-001 protein_coding Mus_musculus 0 353
ENSMUST00000080171 Cyp2c50-001 protein_coding Mus_musculus 0 315
ENSMUST00000068094 Cyp2c50-002 protein_coding Mus_musculus 0 315
ENSMUST00000124391 Cyp2c50-003 retained_intron Mus_musculus 0 303
ENSMUST00000048959 Cyp2c54-201 protein_coding Mus_musculus 0 292
ENSMUST00000067328 Cyp2c67-001 protein_coding Mus_musculus 0 193
ENSMUST00000099472 Cyp2c68-001 protein_coding Mus_musculus 0 191
ENSMUST00000160476 Cyp2c40-001 protein_coding Mus_musculus 0 191
ENSMUST00000162630 Cyp2c40-002 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000168838 Cyp2c69-201 protein_coding Mus_musculus 8.40779e-45 185
ENSMUST00000146494 Cyp2c66-002 nonsense_mediated_decay Mus_musculus 2e-36 158
ENSMUST00000162434 Cyp2c40-003 processed_transcript Mus_musculus 0.0000000000001 82

Loading