C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily c, polypeptide 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162630 Cyp2c40-002 ENSMUSG00000025004 10090 - 19:39767227-39812814 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonKidneyLiverLungOvaryPlacentaENSMUST00000162630
Transcript ID Adipose Adrenal Bladder Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000162630 0.031±0.00 0.159±0.05 0.005±0.00 3.516±1.99 0.105±0.06 115.501±109.40 0.071±0.04 0.296±0.14 0.242±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H6 CIL_0007H6_000U CGP 19:39688834-39812814
CIL_0007H6 CIL_0007H6_000F CGP 19:39767071-39886769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260682 CYP2C9-001 protein_coding Homo_sapiens 0 438
ENST00000285979 CYP2C18-001 protein_coding Homo_sapiens 0 455
ENST00000339022 CYP2C18-002 protein_coding Homo_sapiens 0 435
ENST00000371270 CYP2C8-001 protein_coding Homo_sapiens 0 422
ENST00000371321 CYP2C19-001 protein_coding Homo_sapiens 0 449
ENST00000461906 CYP2C9-002 processed_transcript Homo_sapiens 0 196
ENST00000464755 RP11-400G3.5-001 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000479946 CYP2C8-002 retained_intron Homo_sapiens 0 226
ENST00000480405 CYP2C19-003 protein_coding Homo_sapiens 0 191
ENST00000490994 CYP2C8-008 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000525991 CYP2C8-007 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000526814 CYP2C8-005 retained_intron Homo_sapiens 0 422
ENST00000527420 CYP2C8-003 nonsense_mediated_decay Homo_sapiens 0 226
ENST00000527953 CYP2C8-006 retained_intron Homo_sapiens 0 226
ENST00000533320 CYP2C8-004 retained_intron Homo_sapiens 0 422
ENST00000535898 CYP2C8-201 protein_coding Homo_sapiens 0 422
ENST00000539050 CYP2C8-202 protein_coding Homo_sapiens 0 422
ENST00000623108 CYP2C8-203 protein_coding Homo_sapiens 0 422

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