C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily c, polypeptide 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080171 Cyp2c50-001 ENSMUSG00000054827 10090 + 19:40089696-40113950 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungOvaryENSMUST00000080171
Transcript ID Breast Colon Kidney Liver Lung Ovary
ENSMUST00000080171 2.283±0.34 0.054±0.00 0.032±0.00 236.660±142.27 0.029±0.00 0.234±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H6 CIL_0007H6_000R CGP 19:40037941-40113950
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007H6 CIL_0007H6_000N CGP 19:40089688-40187333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008392 IDA arachidonic acid epoxygenase activity
GO:0016020 IEA membrane
GO:0019369 IDA arachidonic acid metabolic process
GO:0020037 IEA heme binding
GO:0043651 IDA linoleic acid metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070330 IEA aromatase activity
GO:0071614 IDA linoleic acid epoxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260682 CYP2C9-001 protein_coding Homo_sapiens 0 1083
ENST00000285979 CYP2C18-001 protein_coding Homo_sapiens 0 1105
ENST00000339022 CYP2C18-002 protein_coding Homo_sapiens 0 551
ENST00000371270 CYP2C8-001 protein_coding Homo_sapiens 0 974
ENST00000371321 CYP2C19-001 protein_coding Homo_sapiens 0 1027
ENST00000440076 CYP2C56P-001 processed_pseudogene Homo_sapiens 8e-34 147
ENST00000461906 CYP2C9-002 processed_transcript Homo_sapiens 0 351
ENST00000464755 RP11-400G3.5-001 nonsense_mediated_decay Homo_sapiens 0 900
ENST00000473496 CYP2C9-003 processed_transcript Homo_sapiens 0 407
ENST00000479946 CYP2C8-002 retained_intron Homo_sapiens 0 542
ENST00000480405 CYP2C19-003 protein_coding Homo_sapiens 0 315
ENST00000490994 CYP2C8-008 nonsense_mediated_decay Homo_sapiens 0 826
ENST00000525991 CYP2C8-007 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000526814 CYP2C8-005 retained_intron Homo_sapiens 0 736
ENST00000527420 CYP2C8-003 nonsense_mediated_decay Homo_sapiens 0 780
ENST00000527953 CYP2C8-006 retained_intron Homo_sapiens 0 542
ENST00000533320 CYP2C8-004 retained_intron Homo_sapiens 0 736
ENST00000535898 CYP2C8-201 protein_coding Homo_sapiens 0 736
ENST00000539050 CYP2C8-202 protein_coding Homo_sapiens 0 826
ENST00000623108 CYP2C8-203 protein_coding Homo_sapiens 0 826

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