C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily c, polypeptide 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048959 Cyp2c54-201 ENSMUSG00000067225 10090 - 19:40037941-40073811 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000048959
Transcript ID Adipose Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000048959 0.031±0.00 0.436±0.32 0.095±0.01 0.023±0.00 125.994±90.91 0.052±0.01 0.016±0.00 0.186±0.08 0.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H6 CIL_0007H6_000K CGP 19:39992424-40073811
CIL_0007H6 CIL_0007H6_000R CGP 19:40037941-40113950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008392 IDA arachidonic acid epoxygenase activity
GO:0016020 IEA membrane
GO:0019369 IDA arachidonic acid metabolic process
GO:0020037 IEA heme binding
GO:0043651 IDA linoleic acid metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070330 IEA aromatase activity
GO:0071614 IDA linoleic acid epoxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260682 CYP2C9-001 protein_coding Homo_sapiens 0 1003
ENST00000285979 CYP2C18-001 protein_coding Homo_sapiens 0 1077
ENST00000339022 CYP2C18-002 protein_coding Homo_sapiens 0 529
ENST00000371270 CYP2C8-001 protein_coding Homo_sapiens 0 885
ENST00000371321 CYP2C19-001 protein_coding Homo_sapiens 0 972
ENST00000440076 CYP2C56P-001 processed_pseudogene Homo_sapiens 8e-34 147
ENST00000461906 CYP2C9-002 processed_transcript Homo_sapiens 0 324
ENST00000464755 RP11-400G3.5-001 nonsense_mediated_decay Homo_sapiens 0 839
ENST00000473496 CYP2C9-003 processed_transcript Homo_sapiens 0 381
ENST00000479946 CYP2C8-002 retained_intron Homo_sapiens 0 483
ENST00000480405 CYP2C19-003 protein_coding Homo_sapiens 0 292
ENST00000490994 CYP2C8-008 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000525991 CYP2C8-007 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000526814 CYP2C8-005 retained_intron Homo_sapiens 0 660
ENST00000527420 CYP2C8-003 nonsense_mediated_decay Homo_sapiens 0 708
ENST00000527953 CYP2C8-006 retained_intron Homo_sapiens 0 483
ENST00000533320 CYP2C8-004 retained_intron Homo_sapiens 0 660
ENST00000535898 CYP2C8-201 protein_coding Homo_sapiens 0 660
ENST00000539050 CYP2C8-202 protein_coding Homo_sapiens 0 726
ENST00000623108 CYP2C8-203 protein_coding Homo_sapiens 0 726

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