C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 2, subfamily c, polypeptide 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068094 Cyp2c50-002 ENSMUSG00000054827 10090 + 19:40089688-40113950 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000068094
Transcript ID Adipose Adrenal Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000068094 0.036±0.01 0.147±0.00 0.129±0.02 0.073±0.05 132.103±115.32 0.089±0.00 0.061±0.00 0.399±0.00 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H6 CIL_0007H6_000R CGP 19:40037941-40113950
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007H6 CIL_0007H6_000N CGP 19:40089688-40187333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008392 IDA arachidonic acid epoxygenase activity
GO:0016020 IEA membrane
GO:0019369 IDA arachidonic acid metabolic process
GO:0020037 IEA heme binding
GO:0043651 IDA linoleic acid metabolic process
GO:0055114 IEA oxidation-reduction process
GO:0070330 IEA aromatase activity
GO:0071614 IDA linoleic acid epoxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260682 CYP2C9-001 protein_coding Homo_sapiens 0 520
ENST00000285979 CYP2C18-001 protein_coding Homo_sapiens 0 551
ENST00000339022 CYP2C18-002 protein_coding Homo_sapiens 0 1016
ENST00000371270 CYP2C8-001 protein_coding Homo_sapiens 0 483
ENST00000371321 CYP2C19-001 protein_coding Homo_sapiens 0 488
ENST00000440076 CYP2C56P-001 processed_pseudogene Homo_sapiens 8e-34 147
ENST00000461906 CYP2C9-002 processed_transcript Homo_sapiens 0 351
ENST00000464755 RP11-400G3.5-001 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000473496 CYP2C9-003 processed_transcript Homo_sapiens 0 342
ENST00000479946 CYP2C8-002 retained_intron Homo_sapiens 0 244
ENST00000480405 CYP2C19-003 protein_coding Homo_sapiens 0 315
ENST00000490994 CYP2C8-008 nonsense_mediated_decay Homo_sapiens 0 335
ENST00000525991 CYP2C8-007 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000526814 CYP2C8-005 retained_intron Homo_sapiens 0 268
ENST00000527420 CYP2C8-003 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000527953 CYP2C8-006 retained_intron Homo_sapiens 0 268
ENST00000533320 CYP2C8-004 retained_intron Homo_sapiens 0 244
ENST00000535898 CYP2C8-201 protein_coding Homo_sapiens 0 244
ENST00000539050 CYP2C8-202 protein_coding Homo_sapiens 0 335
ENST00000623108 CYP2C8-203 protein_coding Homo_sapiens 0 335

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