C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480733 STAG1-005 ENSG00000118007 9606 - 3:136518043-136752366 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonENST00000480733
Transcript ID Bladder Colon
ENST00000480733 9.385±0.00 8.257±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0030054 IDA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138405 Stag1-005 nonsense_mediated_decay Mus_musculus 0 1312
ENSMUST00000041418 Stag1-004 protein_coding Mus_musculus 0 1312
ENSMUST00000129269 Stag1-001 protein_coding Mus_musculus 0 1312
ENSMUST00000123302 Stag1-008 nonsense_mediated_decay Mus_musculus 0 1066
ENSMUST00000155108 Stag1-007 nonsense_mediated_decay Mus_musculus 0 870
ENSMUST00000143816 Stag1-003 retained_intron Mus_musculus 0 717
ENSMUST00000146312 Stag1-002 protein_coding Mus_musculus 0 717
ENSMUST00000133388 Stag1-011 protein_coding Mus_musculus 0 691
ENSMUST00000144005 Stag1-012 retained_intron Mus_musculus 0 496
ENSMUST00000123315 Stag1-010 retained_intron Mus_musculus 0 287
ENSMUST00000124487 Stag1-009 protein_coding Mus_musculus 0 268

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