C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041418 Stag1-004 ENSMUSG00000037286 10090 + 9:100643613-100958544 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000041418
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000041418 0.900±0.13 0.528±0.10 0.726±0.14 0.622±0.15 0.725±0.33 1.199±0.41 1.250±0.27 0.593±0.00 1.733±0.71 4.248±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001C8 CIL_0001C8_0002 CGP 9:100552188-100959375
CIL_0000WP CIL_0000WP_0002 CGP 9:100597798-101034898

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003682 IDA chromatin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089376 stag1b-201 protein_coding Danio_rerio 0 1533
ENSDART00000142864 stag1b-001 protein_coding Danio_rerio 0 1533
ENST00000236698 STAG1-002 protein_coding Homo_sapiens 0 7572
ENST00000383202 STAG1-001 protein_coding Homo_sapiens 0 5260
ENST00000434713 STAG1-201 protein_coding Homo_sapiens 0 4239
ENST00000462818 STAG1-008 retained_intron Homo_sapiens 0 1151
ENST00000465961 STAG1-007 retained_intron Homo_sapiens 0 510
ENST00000471595 PCCB-002 protein_coding Homo_sapiens 0 1498
ENST00000478469 PCCB-006 protein_coding Homo_sapiens 0 1498
ENST00000480733 STAG1-005 protein_coding Homo_sapiens 0 1312
ENST00000483235 STAG1-003 nonsense_mediated_decay Homo_sapiens 0 2907
ENST00000487065 STAG1-004 nonsense_mediated_decay Homo_sapiens 0 2795
ENST00000492318 STAG1-006 protein_coding Homo_sapiens 0 640

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