C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129269 Stag1-001 ENSMUSG00000037286 10090 + 9:100643448-100958545 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129269 2.587±0.40 0.348±0.16 5.631±0.54 7.305±3.21 1.610±0.66 0.473±0.10 1.392±0.49 1.682±0.53 3.303±1.81 1.787±0.41 3.135±0.35 2.352±2.32 7.372±2.15 2.189±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001C8 CIL_0001C8_0002 CGP 9:100552188-100959375
CIL_0000WP CIL_0000WP_0002 CGP 9:100597798-101034898

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089376 stag1b-201 protein_coding Danio_rerio 0 1639
ENSDART00000142864 stag1b-001 protein_coding Danio_rerio 0 1639
ENST00000236698 STAG1-002 protein_coding Homo_sapiens 0 5278
ENST00000383202 STAG1-001 protein_coding Homo_sapiens 0 7710
ENST00000434713 STAG1-201 protein_coding Homo_sapiens 0 4276
ENST00000462818 STAG1-008 retained_intron Homo_sapiens 0 1151
ENST00000465961 STAG1-007 retained_intron Homo_sapiens 0 510
ENST00000471595 PCCB-002 protein_coding Homo_sapiens 0 1500
ENST00000478469 PCCB-006 protein_coding Homo_sapiens 0 1500
ENST00000480733 STAG1-005 protein_coding Homo_sapiens 0 1312
ENST00000483235 STAG1-003 nonsense_mediated_decay Homo_sapiens 0 2907
ENST00000487065 STAG1-004 nonsense_mediated_decay Homo_sapiens 0 2795
ENST00000492318 STAG1-006 protein_coding Homo_sapiens 0 640

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