C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480956 LSM5-003 ENSG00000106355 9606 - 7:32487065-32490371 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryTestisENST00000480956
Transcript ID Colon Lung Ovary Testis
ENST00000480956 0.261±0.00 0.298±0.00 2.187±0.00 1.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000359 CIL_000359_0001 CGP 7:31751179-32495283
CIL_0003FD CIL_0003FD_0001 CGP 7:32485332-32588721

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170382 Lsm5-001 protein_coding Mus_musculus 0 220
ENSMUST00000145844 Gm7846-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000174543 Gm10074-001 processed_pseudogene Mus_musculus 9.94922e-44 182
ENSMUST00000120640 Gm11792-001 processed_pseudogene Mus_musculus 3e-35 154

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