C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482569 GPC2-009 ENSG00000213420 9606 - 7:100176229-100177369 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryENST00000482569
Transcript ID Breast Colon Ovary
ENST00000482569 1.345±0.00 0.377±0.00 0.921±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005CG CIL_0005CG_0001 CGP 7:100159244-100177372
CIL_0005CH CIL_0005CH_0001 CGP 7:100169606-100221488

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161827 Gpc2-001 protein_coding Mus_musculus 0 433
ENSMUST00000161984 Gpc2-002 nonsense_mediated_decay Mus_musculus 0 429
ENSMUST00000159350 Gpc2-008 processed_transcript Mus_musculus 0 422
ENSMUST00000014089 Gpc2-004 protein_coding Mus_musculus 0 422
ENSMUST00000159689 Gpc2-005 retained_intron Mus_musculus 0 422
ENSMUST00000159067 Gpc2-007 nonsense_mediated_decay Mus_musculus 0 422
ENSMUST00000162909 Gpc2-003 retained_intron Mus_musculus 0 283

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