C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: rhomboid 5 homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482904 RHBDF1-009 ENSG00000007384 9606 - 16:61425-62206 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000482904
Transcript ID Bladder
ENST00000482904 1.584±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_00015Q CIL_00015Q_0001 CGP 16:53010-76355
CIL_0007A5 CIL_0007A5_0002 CGP 16:58059-85853

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143036 Rhbdf1-007 retained_intron Mus_musculus 0 462
ENSMUST00000146179 Rhbdf1-008 nonsense_mediated_decay Mus_musculus 0 451
ENSMUST00000020524 Rhbdf1-006 protein_coding Mus_musculus 0 451

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