C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486254 PKP4-007 ENSG00000144283 9606 + 2:158669170-158677355 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000486254
Transcript ID Muscle
ENST00000486254 0.942±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151452 Pkp4-013 processed_transcript Mus_musculus 0 771
ENSMUST00000112577 Pkp4-010 protein_coding Mus_musculus 0 771
ENSMUST00000183359 Pkp4-003 nonsense_mediated_decay Mus_musculus 0 771
ENSMUST00000102754 Pkp4-001 protein_coding Mus_musculus 0 771
ENSMUST00000168631 Pkp4-201 protein_coding Mus_musculus 0 553
ENSMUST00000124127 Pkp4-012 processed_transcript Mus_musculus 0 553
ENSMUST00000037903 Pkp4-004 protein_coding Mus_musculus 0 553

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