C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112577 Pkp4-010 ENSMUSG00000026991 10090 + 2:59229749-59355205 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryENSMUST00000112577
Transcript ID Adrenal Breast Liver Ovary
ENSMUST00000112577 2.116±0.38 2.423±0.20 3.530±0.50 6.947±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0014069 IDA postsynaptic density
GO:0016337 IEA single organismal cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389757 PKP4-001 protein_coding Homo_sapiens 0 3214
ENST00000389759 PKP4-002 protein_coding Homo_sapiens 0 4468
ENST00000411900 PKP4-009 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000421462 PKP4-005 nonsense_mediated_decay Homo_sapiens 0 2837
ENST00000426248 PKP4-003 nonsense_mediated_decay Homo_sapiens 0 4813
ENST00000426801 PKP4P1-001 unprocessed_pseudogene Homo_sapiens 0 1899
ENST00000452162 PKP4-004 nonsense_mediated_decay Homo_sapiens 0 2274
ENST00000457109 PKP4-010 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000462335 PKP4-011 processed_transcript Homo_sapiens 0 645
ENST00000480171 PKP4-006 retained_intron Homo_sapiens 0 2410
ENST00000481115 PKP4-012 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000483881 PKP4-014 retained_intron Homo_sapiens 0 414
ENST00000486254 PKP4-007 retained_intron Homo_sapiens 0 771
ENST00000492496 PKP4-016 retained_intron Homo_sapiens 0 647
ENST00000494945 PKP4-013 processed_transcript Homo_sapiens 0 481
ENST00000495123 PKP4-015 processed_transcript Homo_sapiens 0 512

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