C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plakophilin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144283 PKP4 9606 + 2:158456964-158682879 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389757 PKP4-001 158457099-158682879 protein_coding
  ENST00000389759 PKP4-002 158457112-158681429 protein_coding
  ENST00000411900 PKP4-009 158457136-158588950 nonsense_mediated_decay
  ENST00000421462 PKP4-005 158457455-158663003 nonsense_mediated_decay
  ENST00000426248 PKP4-003 158456964-158681052 nonsense_mediated_decay
  ENST00000452162 PKP4-004 158457133-158663066 nonsense_mediated_decay
  ENST00000457109 PKP4-010 158457114-158621022 nonsense_mediated_decay
  ENST00000462335 PKP4-011 158458193-158621396 processed_transcript
  ENST00000479398 PKP4-008 158457133-158458331 processed_transcript
  ENST00000480171 PKP4-006 158662242-158681426 retained_intron
  ENST00000481115 PKP4-012 158577341-158631932 nonsense_mediated_decay
  ENST00000483881 PKP4-014 158663058-158666659 retained_intron
  ENST00000486254 PKP4-007 158669170-158677355 retained_intron
  ENST00000492496 PKP4-016 158642520-158661764 retained_intron
  ENST00000494945 PKP4-013 158632474-158640759 processed_transcript
  ENST00000495123 PKP4-015 158662990-158669306 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389757ENST00000389759ENST00000421462ENST00000426248ENST00000452162ENST00000480171ENST00000486254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389757 N/A N/A 3.024±0.00 N/A 0.875±0.00 1.711±0.00 N/A 4.862±3.58 1.025±0.00 N/A N/A 2.952±0.94 0.404±0.03 N/A
ENST00000389759 9.482±0.00 6.563±0.00 N/A 19.714±5.43 7.273±0.00 6.410±3.05 5.148±3.07 24.796±19.42 1.891±0.23 5.793±2.75 4.203±0.00 12.581±10.25 2.859±0.87 8.534±0.74
ENST00000421462 N/A N/A 5.896±0.00 N/A N/A N/A 1.524±0.00 N/A 2.457±0.00 N/A N/A 3.759±0.00 N/A N/A
ENST00000426248 N/A N/A 3.527±0.00 10.907±0.00 2.229±0.00 N/A 3.724±0.00 N/A 1.428±0.10 3.805±0.00 1.148±0.00 16.983±0.00 1.281±0.87 13.535±0.00
ENST00000452162 N/A N/A 13.636±0.00 N/A 4.233±0.00 6.064±0.00 N/A N/A N/A N/A 0.710±0.00 4.798±0.00 N/A N/A
ENST00000480171 N/A 3.992±0.00 6.467±0.00 N/A 3.399±0.93 N/A N/A N/A 1.762±0.00 2.927±0.00 N/A 4.790±1.64 N/A N/A
ENST00000486254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.942±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0001 CGP 2:158456964-158862958

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007043 ISS cell-cell junction assembly
GO:0007267 NAS cell-cell signaling
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0014069 IEA postsynaptic density
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 IDA desmosome
GO:0030155 NAS regulation of cell adhesion
GO:0030496 IDA midbody
GO:0032321 IDA positive regulation of Rho GTPase activity
GO:0032467 IMP positive regulation of cytokinesis
GO:0044291 IDA cell-cell contact zone
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051233 IDA spindle midzone
GO:0072686 IDA mitotic spindle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045331 pkp4 plakophilin 4 protein_coding Danio_rerio
ENSMUSG00000026991 Pkp4 plakophilin 4 protein_coding Mus_musculus

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