C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168631 Pkp4-201 ENSMUSG00000026991 10090 + 2:59160850-59355204 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000168631
Transcript ID Adipose Bladder Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000168631 7.393±1.71 9.453±0.76 4.059±0.80 4.567±1.33 4.486±1.42 3.625±0.00 1.076±0.40 2.931±0.00 2.820±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 ISS spindle pole
GO:0005737 ISS cytoplasm
GO:0005856 ISS cytoskeleton
GO:0005886 ISS plasma membrane
GO:0005911 ISS cell-cell junction
GO:0007043 IMP cell-cell junction assembly
GO:0009898 ISS cytoplasmic side of plasma membrane
GO:0014069 IDA postsynaptic density
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 ISS desmosome
GO:0030496 ISS midbody
GO:0032321 ISS positive regulation of Rho GTPase activity
GO:0032467 ISS positive regulation of cytokinesis
GO:0044291 ISS cell-cell contact zone
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051233 ISS spindle midzone
GO:0072686 ISS mitotic spindle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389757 PKP4-001 protein_coding Homo_sapiens 0 5374
ENST00000389759 PKP4-002 protein_coding Homo_sapiens 0 4337
ENST00000411900 PKP4-009 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000421462 PKP4-005 nonsense_mediated_decay Homo_sapiens 0 2189
ENST00000426248 PKP4-003 nonsense_mediated_decay Homo_sapiens 0 3203
ENST00000426801 PKP4P1-001 unprocessed_pseudogene Homo_sapiens 0 2287
ENST00000452162 PKP4-004 nonsense_mediated_decay Homo_sapiens 0 2894
ENST00000457109 PKP4-010 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000462335 PKP4-011 processed_transcript Homo_sapiens 0 645
ENST00000480171 PKP4-006 retained_intron Homo_sapiens 0 1158
ENST00000481115 PKP4-012 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000483881 PKP4-014 retained_intron Homo_sapiens 0 414
ENST00000486254 PKP4-007 retained_intron Homo_sapiens 0 553
ENST00000492496 PKP4-016 retained_intron Homo_sapiens 0 647
ENST00000494945 PKP4-013 processed_transcript Homo_sapiens 0 481
ENST00000495123 PKP4-015 processed_transcript Homo_sapiens 0 512

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