C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: diphthamide biosynthesis 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488423 DPH3-001 ENSG00000154813 9606 - 3:16257978-16264972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000488423
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000488423 3.130±0.00 3.145±0.00 1.046±0.00 2.222±0.39 2.783±1.59 1.529±0.38 2.231±2.03 3.427±2.36 2.301±0.08 2.347±0.66 3.786±2.68 1.649±0.36 1.772±0.53 3.617±2.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HN CIL_0004HN_0001 CGP 3:16174649-16264972
CIL_0004HO CIL_0004HO_0001 CGP 3:16257978-16350299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0017183 ISS peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO:0046872 IEA metal ion binding
GO:0050709 IDA negative regulation of protein secretion
GO:0051099 IDA positive regulation of binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067955 Dph3-001 protein_coding Mus_musculus 0 368
ENSMUST00000022461 Dph3-002 protein_coding Mus_musculus 0 353
ENSMUST00000076359 Dph3b-ps-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000112000 Dph3-004 protein_coding Mus_musculus 0 261
ENSMUST00000144149 Dph3-006 retained_intron Mus_musculus 0 224
ENSMUST00000167796 Dph3-007 processed_transcript Mus_musculus 0 224
ENSMUST00000112001 Dph3-003 nonsense_mediated_decay Mus_musculus 0 224

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