C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 snRNP-associated SURP domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488497 U2SURP-002 ENSG00000163714 9606 + 3:143001168-143056500 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLungENST00000488497
Transcript ID Brain Breast Heart Kidney Lung
ENST00000488497 2.389±0.00 2.756±0.00 1.017±0.00 2.992±0.00 1.487±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191213 U2surp-009 nonsense_mediated_decay Mus_musculus 0 4470
ENSMUST00000078374 U2surp-001 protein_coding Mus_musculus 0 2582
ENSMUST00000079659 U2surp-002 protein_coding Mus_musculus 0 2582
ENSMUST00000185515 U2surp-005 protein_coding Mus_musculus 0 680
ENSMUST00000186139 U2surp-007 retained_intron Mus_musculus 0 364
ENSDART00000132651 u2surp-001 protein_coding Danio_rerio 0 339
ENSDART00000087714 u2surp-201 protein_coding Danio_rerio 0 261
ENSMUST00000190019 U2surp-006 protein_coding Mus_musculus 0 254
ENSDART00000132854 u2surp-002 protein_coding Danio_rerio 0 224
ENSMUST00000186076 U2surp-004 retained_intron Mus_musculus 3.99931e-42 178
ENSMUST00000188017 U2surp-008 retained_intron Mus_musculus 2e-20 106

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