C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidylprolyl isomerase A (cyclophilin A)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489459 PPIA-003 ENSG00000196262 9606 + 7:44796681-44801630 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryTestisENST00000489459
Transcript ID Muscle Ovary Testis
ENST00000489459 11.887±0.00 155.442±130.91 60.349±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SC CIL_0000SC_0001 CGP 7:44748581-44824564
CIL_0000SB CIL_0000SB_0001 CGP 7:44796680-44848083

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000413 IDA:IEA protein peptidyl-prolyl isomerization
GO:0002576 TAS platelet degranulation
GO:0003755 IDA:IEA peptidyl-prolyl cis-trans isomerase activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0005925 IDA focal adhesion
GO:0006278 TAS RNA-dependent DNA replication
GO:0006457 TAS:IEA protein folding
GO:0007596 TAS blood coagulation
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0019058 TAS viral life cycle
GO:0019061 TAS uncoating of virus
GO:0019068 TAS virion assembly
GO:0019076 TAS viral release from host cell
GO:0030168 TAS platelet activation
GO:0030260 TAS entry into host cell
GO:0034389 IMP lipid particle organization
GO:0042277 IEA peptide binding
GO:0044822 IDA poly(A) RNA binding
GO:0045069 IMP regulation of viral genome replication
GO:0045070 IMP positive regulation of viral genome replication
GO:0046790 NAS virion binding
GO:0050714 IMP positive regulation of protein secretion
GO:0050900 TAS leukocyte migration
GO:0051082 TAS unfolded protein binding
GO:0070062 IDA extracellular vesicular exosome
GO:0075713 TAS establishment of integrated proviral latency

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 767
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 767
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 767
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 595
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 588
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 582
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 569
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 558
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 540
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 0 281
ENSMUST00000121648 Gm6067-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 246
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 9.99967e-42 174
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 1e-31 141
ENSMUST00000185012 Gm12728-003 protein_coding Mus_musculus 3e-18 97
ENSMUST00000184254 Gm12728-002 protein_coding Mus_musculus 3e-18 97

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