C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000015092 col1a1b-001 ENSDARG00000035809 7955 - 12:3687446-3725230 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000015092
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000015092 0.873±0.36 12.777±12.75 15.040±4.55 0.290±0.00 39.740±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004X4 CIL_0004X4_0001 CGP 12:3669968-3725230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005581 IEA collagen

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023123 Col2a1-001 protein_coding Mus_musculus 0 939
ENSMUST00000031668 Col1a2-001 protein_coding Mus_musculus 3e-35 156
ENSMUST00000088355 Col2a1-002 protein_coding Mus_musculus 0 939
ENSMUST00000133488 Col2a1-005 processed_transcript Mus_musculus 6e-38 161
ENSMUST00000139246 Col2a1-006 retained_intron Mus_musculus 1.4013e-45 187
ENST00000225964 COL1A1-001 protein_coding Homo_sapiens 0 1757
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 2e-31 143
ENST00000337299 COL2A1-008 protein_coding Homo_sapiens 0 955
ENST00000380518 COL2A1-001 protein_coding Homo_sapiens 0 955
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 9e-29 132
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 1e-23 117
ENST00000493991 COL2A1-007 processed_transcript Homo_sapiens 0 496
ENST00000510710 COL1A1-018 retained_intron Homo_sapiens 2.94273e-44 183
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 2e-31 143

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