C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031668 Col1a2-001 ENSMUSG00000029661 10090 + 6:4505493-4541543 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031668
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031668 139.585±122.17 22.421±1.80 512.787±17.02 22.251±15.79 205.415±81.10 32.780±24.31 14.043±9.86 25.245±3.52 6.616±6.47 52.637±37.59 28.950±4.12 137.778±71.68 141.615±0.12 5.597±4.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DY CIL_0006DY_0002 CGP 6:4076899-4541543
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SO CIL_0004SO_0003 CGP 6:4504814-4643381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001568 IEA blood vessel development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005581 IDA collagen trimer
GO:0005584 IDA collagen type I trimer
GO:0005615 IEA extracellular space
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007266 IEA Rho protein signal transduction
GO:0008217 IEA regulation of blood pressure
GO:0030199 IEA collagen fibril organization
GO:0030674 IEA protein binding, bridging
GO:0031012 IDA extracellular matrix
GO:0042802 IEA identical protein binding
GO:0043589 IEA skin morphogenesis
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0048407 IEA platelet-derived growth factor binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070208 IDA protein heterotrimerization
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000042990 col1a2-201 protein_coding Danio_rerio 0 390
ENSDART00000144544 col1a2-001 protein_coding Danio_rerio 0 390
ENSDART00000015092 col1a1b-001 protein_coding Danio_rerio 3e-35 156
ENST00000225964 COL1A1-001 protein_coding Homo_sapiens 3e-30 139
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 0 5664
ENST00000337299 COL2A1-008 protein_coding Homo_sapiens 3e-39 169
ENST00000380518 COL2A1-001 protein_coding Homo_sapiens 3e-39 169
ENST00000461525 COL1A2-005 retained_intron Homo_sapiens 0 551
ENST00000464916 COL1A2-003 retained_intron Homo_sapiens 0 1005
ENST00000467931 COL1A2-006 retained_intron Homo_sapiens 0 348
ENST00000469732 COL1A2-008 retained_intron Homo_sapiens 0 392
ENST00000473573 COL1A2-007 retained_intron Homo_sapiens 0 896
ENST00000481570 COL1A2-002 retained_intron Homo_sapiens 0 835
ENST00000488298 COL1A2-012 retained_intron Homo_sapiens 0 340
ENST00000493991 COL2A1-007 processed_transcript Homo_sapiens 2e-39 169
ENST00000497316 COL1A2-004 retained_intron Homo_sapiens 0 843
ENST00000510710 COL1A1-018 retained_intron Homo_sapiens 6e-16 90
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 0 4972

Loading