C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494232 RPS18-003 ENSG00000223367 9606 + CHR_HSCHR6_MHC_DBB_CTG1:33250017-33254431 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005581 IEA collagen trimer
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 529
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 529
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 529
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 527
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 462
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 438
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 427
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 320
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 276
ENSMUST00000174662 Rps18-003 retained_intron Mus_musculus 0 195

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