C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: speckle-type POZ protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503676 SPOP-007 ENSG00000121067 9606 - 17:49600203-49646630 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENST00000503676
Transcript ID Liver Muscle
ENST00000503676 6.199±0.00 3.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000877 CIL_000877_0001 VISTA 17:49438854-50041456
CIL_0009BV CIL_0009BV_0001 VISTA 17:49438877-50041441
CIL_0007QJ CIL_0007QJ_0001 VISTA 17:49459872-50061823
CIL_0004N3 CIL_0004N3_0002 CGP 17:49575858-49678234
CIL_0004N2 CIL_0004N2_0002 CGP 17:49598884-49709014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0031463 IDA Cul3-RING ubiquitin ligase complex
GO:0031625 IPI ubiquitin protein ligase binding
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107724 Spop-002 protein_coding Mus_musculus 0 1879
ENSMUST00000107722 Spop-001 protein_coding Mus_musculus 0 1879
ENSDART00000011922 spopla-001 protein_coding Danio_rerio 0 627
ENSDART00000129143 spopla-201 protein_coding Danio_rerio 0 604
ENSMUST00000150922 Spop-005 processed_transcript Mus_musculus 0 599
ENSMUST00000150884 Spop-003 protein_coding Mus_musculus 0 516
ENSMUST00000098878 Gm4778-201 protein_coding Mus_musculus 0 466
ENSMUST00000159517 Gm4778-001 protein_coding Mus_musculus 0 466
ENSMUST00000075953 Tdpoz4-201 protein_coding Mus_musculus 0 429
ENSMUST00000098879 Tdpoz5-201 protein_coding Mus_musculus 0 425
ENSMUST00000091692 Gm10697-201 protein_coding Mus_musculus 0 425
ENSMUST00000179064 Gm4858-201 protein_coding Mus_musculus 0 392
ENSMUST00000127713 Spop-004 protein_coding Mus_musculus 0 390
ENSMUST00000120488 Klhl22-001 protein_coding Mus_musculus 0.000000004 68
ENSMUST00000155115 Adam17-004 retained_intron Mus_musculus 0.00000002 66
ENSMUST00000146537 Abl1-002 processed_transcript Mus_musculus 0.0000002 62
ENSMUST00000165682 Rasl12-202 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000123200 Paqr6-004 retained_intron Mus_musculus 0.000003 58

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