C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506347 PABPC1P1-001 ENSG00000231707 9606 + 4:39973444-39974338 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000506347
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000506347 0.379±0.00 0.211±0.00 0.125±0.00 0.461±0.30 0.785±0.60 0.226±0.15 0.447±0.23 0.715±0.58 0.396±0.33 0.322±0.02 0.068±0.00 0.359±0.21 0.275±0.00 0.270±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TZ CIL_0002TZ_0002 CGP 4:39698044-39977956
CIL_0002TY CIL_0002TY_0002 CGP 4:39822863-40158252

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001809 Pabpc1-001 protein_coding Mus_musculus 0 793
ENSMUST00000162696 Gm16580-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000156793 Pabpc1-006 processed_transcript Mus_musculus 0 654
ENSMUST00000119625 Gm11693-001 processed_pseudogene Mus_musculus 3e-21 106

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