C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11693
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119625 Gm11693-001 ENSMUSG00000083339 10090 + 11:113678530-113679331 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000119625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000119625 0.182±0.04 0.095±0.00 0.092±0.02 0.085±0.03 0.153±0.01 0.146±0.10 0.048±0.00 0.081±0.03 0.178±0.12 0.058±0.00 0.110±0.01 0.280±0.07 0.145±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0002 VISTA 11:113433041-114034346
CIL_000679 CIL_000679_0002 CGP 11:113649169-113684155
CIL_00067A CIL_00067A_0002 CGP 11:113661319-113694647
CIL_0008QM CIL_0008QM_0002 VISTA 11:113678008-114283381

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318607 PABPC1-001 protein_coding Homo_sapiens 5e-21 108
ENST00000506347 PABPC1P1-001 processed_pseudogene Homo_sapiens 3e-21 106
ENST00000517403 PABPC1-007 protein_coding Homo_sapiens 7e-22 108
ENST00000518716 PABPC1-022 retained_intron Homo_sapiens 9e-22 108
ENST00000519004 PABPC1-002 protein_coding Homo_sapiens 3e-21 108
ENST00000519100 PABPC1-012 protein_coding Homo_sapiens 0.00002 55
ENST00000519596 PABPC1-013 processed_transcript Homo_sapiens 0.00001 55
ENST00000519622 PABPC1-024 nonsense_mediated_decay Homo_sapiens 4e-20 102
ENST00000522387 PABPC1-003 protein_coding Homo_sapiens 3e-21 108
ENST00000523636 PABPC1-014 nonsense_mediated_decay Homo_sapiens 1e-20 104
ENST00000539977 PABPC1P4-001 processed_pseudogene Homo_sapiens 3e-16 92
ENST00000610907 PABPC1-201 protein_coding Homo_sapiens 3e-20 104

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