C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514705 TSPAN17-004 ENSG00000048140 9606 + 5:176647497-176659053 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyMuscleOvaryENST00000514705
Transcript ID Bladder Brain Heart Kidney Muscle Ovary
ENST00000514705 0.324±0.00 0.479±0.00 0.086±0.00 0.268±0.00 0.282±0.00 0.944±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002NB CIL_0002NB_0001 CGP 5:176630682-176659054
CIL_0002NA CIL_0002NA_0001 CGP 5:176647387-176880895

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131692 Tspan17-002 protein_coding Mus_musculus 0 749
ENSMUST00000026993 Tspan17-001 protein_coding Mus_musculus 0 749
ENSMUST00000099503 Tspan17-009 protein_coding Mus_musculus 0 632
ENSMUST00000145574 Tspan17-003 protein_coding Mus_musculus 0 483
ENSMUST00000163796 Tspan17-007 protein_coding Mus_musculus 0 429
ENSMUST00000130568 Tspan17-005 protein_coding Mus_musculus 0 379
ENSMUST00000171859 Tspan17-008 protein_coding Mus_musculus 0 350
ENSMUST00000139574 Tspan17-004 retained_intron Mus_musculus 0 307
ENSDART00000101132 TSPAN17-201 protein_coding Danio_rerio 0 237
ENSDART00000075178 tspan5a-201 protein_coding Danio_rerio 0 215
ENSDART00000126739 tspan5a-202 protein_coding Danio_rerio 0 215
ENSMUST00000163915 Tspan17-006 protein_coding Mus_musculus 1e-33 150

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