C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor coactivator 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518287 NCOA2-002 ENSG00000140396 9606 - 8:70112070-70402079 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverMuscleENST00000518287
Transcript ID Breast Heart Liver Muscle
ENST00000518287 1.183±0.00 1.041±0.00 1.476±0.00 1.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ME CIL_0007ME_0001 UCNEbase 8:70008937-70182178
CIL_0003BO CIL_0003BO_0001 CGP 8:70051651-70403805
CIL_0003BN CIL_0003BN_0001 CGP 8:70109762-70608387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004402 IEA histone acetyltransferase activity
GO:0004871 IEA signal transducer activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0016573 IEA histone acetylation
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081713 Ncoa2-001 protein_coding Mus_musculus 0 5409
ENSMUST00000068304 Ncoa2-201 protein_coding Mus_musculus 0 5308
ENSMUST00000143603 Ncoa2-004 retained_intron Mus_musculus 0 3520
ENSMUST00000147927 Ncoa2-003 retained_intron Mus_musculus 0 3518
ENSMUST00000006037 Ncoa2-002 protein_coding Mus_musculus 0 3518
ENSMUST00000139970 Ncoa2-006 retained_intron Mus_musculus 0 1081
ENSMUST00000124088 Ncoa2-005 retained_intron Mus_musculus 0 776
ENSMUST00000133232 Ncoa2-008 retained_intron Mus_musculus 0 592
ENSMUST00000145280 Ncoa2-007 protein_coding Mus_musculus 0 468
ENSMUST00000146784 Ncoa2-009 retained_intron Mus_musculus 0 292

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