C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520002 CSMD1-001 ENSG00000183117 9606 - 8:2938099-4994972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartENST00000520002
Transcript ID Brain Heart
ENST00000520002 0.552±0.00 0.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000070 CIL_000070_0002 CGP 8:2045040-4994972
CIL_0000LC CIL_0000LC_0001 CGP 8:2935353-6643623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001964 IEA startle response
GO:0042593 IEA glucose homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000082104 Csmd1-001 protein_coding Mus_musculus 0 10600
ENSMUST00000131778 Csmd1-003 processed_transcript Mus_musculus 0 5491
ENSMUST00000125551 Csmd1-002 retained_intron Mus_musculus 0 2165
ENSMUST00000137947 Csmd1-006 processed_transcript Mus_musculus 0 1733
ENSMUST00000138348 Csmd1-007 retained_intron Mus_musculus 0 1591
ENSMUST00000133933 Csmd1-005 retained_intron Mus_musculus 0 627
ENSMUST00000160658 Csmd3-004 protein_coding Mus_musculus 0 518
ENSMUST00000100670 Csmd3-201 protein_coding Mus_musculus 0 457
ENSMUST00000162830 Csmd3-001 protein_coding Mus_musculus 0 457
ENSMUST00000122983 Csmd1-004 processed_transcript Mus_musculus 0 409
ENSMUST00000161653 Csmd3-005 protein_coding Mus_musculus 0 296
ENSDART00000006458 protein_coding Danio_rerio 0 209
ENSDART00000148564 protein_coding Danio_rerio 0 209
ENSMUST00000110261 Csmd3-006 retained_intron Mus_musculus 2e-40 174

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