C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FCH and double SH3 domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520747 FCHSD1-006 ENSG00000197948 9606 - 5:141639303-141642621 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverMuscleOvaryENST00000520747
Transcript ID Adrenal Brain Colon Heart Liver Muscle Ovary
ENST00000520747 1.680±0.00 1.462±0.16 0.367±0.00 0.059±0.00 0.089±0.00 0.147±0.00 1.350±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QE CIL_0006QE_0001 CGP 5:141620876-141641077
CIL_0006QB CIL_0006QB_0001 CGP 5:141636950-141651419
CIL_0002P1 CIL_0002P1_0001 CGP 5:141639302-141682221

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043437 Fchsd1-001 protein_coding Mus_musculus 0 433
ENSMUST00000165643 Fchsd1-002 retained_intron Mus_musculus 0 433
ENSMUST00000070709 Rell2-001 protein_coding Mus_musculus 0 363
ENSMUST00000177058 Rell2-007 protein_coding Mus_musculus 0 359
ENSMUST00000166531 Rell2-009 retained_intron Mus_musculus 0 267
ENSMUST00000169498 Rell2-012 protein_coding Mus_musculus 0 267
ENSMUST00000091932 Rell2-002 protein_coding Mus_musculus 0 267
ENSMUST00000163591 Rell2-005 protein_coding Mus_musculus 0 267
ENSMUST00000176104 Rell2-010 protein_coding Mus_musculus 0 267
ENSMUST00000176902 Rell2-006 protein_coding Mus_musculus 0 267
ENSMUST00000164499 Rell2-008 retained_intron Mus_musculus 0 259
ENSMUST00000168056 Rell2-003 nonsense_mediated_decay Mus_musculus 0 259
ENSMUST00000169360 Rell2-011 protein_coding Mus_musculus 2e-35 156

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