C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-phase kinase-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521216 SKP1-009 ENSG00000113558 9606 - 5:134157392-134176920 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000521216
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000521216 75.449±0.00 79.920±0.00 240.959±0.00 109.229±0.00 64.287±48.24 57.506±49.49 52.289±39.31 38.167±0.00 83.984±0.00 40.293±26.13 82.849±27.59 104.274±21.18 123.597±38.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GN CIL_0000GN_0002 CGP 5:134114711-134177038
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037324 Skp1a-001 protein_coding Mus_musculus 0 819
ENSMUST00000109072 Skp1a-002 protein_coding Mus_musculus 0 811
ENSMUST00000116595 Skp1a-005 nonsense_mediated_decay Mus_musculus 0 562
ENSMUST00000119054 Gm12988-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000147684 Skp1a-004 nonsense_mediated_decay Mus_musculus 0 431
ENSDART00000008454 skp1-001 protein_coding Danio_rerio 0 416
ENSMUST00000166537 Skp1a-006 protein_coding Mus_musculus 0 254
ENSMUST00000093121 Skp1a-003 retained_intron Mus_musculus 4e-36 156

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