C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nucleophosmin (nucleolar phosphoprotein B23, numatrin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521260 NPM1-009 ENSG00000181163 9606 + 5:171390094-171391777 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417
CIL_00097F CIL_00097F_0001 VISTA 5:170900986-171503014
CIL_00092S CIL_00092S_0001 VISTA 5:171022159-171623481

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 211
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 211
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 211
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 211
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 200
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 4e-19 99

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