C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nucleophosmin (nucleolar phosphoprotein B23, numatrin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521672 NPM1-005 ENSG00000181163 9606 + 5:171387799-171400155 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417
CIL_00097F CIL_00097F_0001 VISTA 5:170900986-171503014
CIL_00092S CIL_00092S_0001 VISTA 5:171022159-171623481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 479
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 479
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 479
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 479
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 451
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 211

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