C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhophilin, Rho GTPase binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522335 RHPN1-002 ENSG00000158106 9606 + 8:143368988-143384218 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyOvaryPlacentaTestisENST00000522335
Transcript ID Brain Breast Heart Kidney Ovary Placenta Testis
ENST00000522335 1.097±0.00 0.179±0.00 0.122±0.00 0.369±0.25 5.901±0.00 0.498±0.00 1.810±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0001NH CIL_0001NH_0001 CGP 8:143304384-143384220
CIL_0001NI CIL_0001NI_0001 CGP 8:143368855-143430406

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149407 Rhpn1-005 nonsense_mediated_decay Mus_musculus 0 846
ENSMUST00000023244 Rhpn1-002 protein_coding Mus_musculus 0 846
ENSMUST00000121137 Rhpn1-001 protein_coding Mus_musculus 0 846
ENSMUST00000124749 Rhpn1-003 retained_intron Mus_musculus 0 787
ENSMUST00000143056 Rhpn1-004 retained_intron Mus_musculus 0 420

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