C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528081 RBM25-008 ENSG00000119707 9606 + 14:73071637-73120229 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartOvaryTestisENST00000528081
Transcript ID Adipose Adrenal Brain Colon Heart Ovary Testis
ENST00000528081 6.762±0.00 11.736±0.00 9.099±0.00 4.267±0.00 1.794±0.00 7.168±0.00 7.852±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0001 VISTA 14:72878760-73482269
CIL_0001TO CIL_0001TO_0001 CGP 14:72969451-73123898
CIL_0003OW CIL_0003OW_0001 CGP 14:73058436-73223691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 IBA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0042981 IDA regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182450 Rbm25-020 nonsense_mediated_decay Mus_musculus 0 4071
ENSMUST00000048155 Rbm25-002 protein_coding Mus_musculus 0 3251
ENSMUST00000181983 Rbm25-003 protein_coding Mus_musculus 0 1703
ENSMUST00000182255 Rbm25-004 retained_intron Mus_musculus 0 789
ENSMUST00000182633 Rbm25-010 nonsense_mediated_decay Mus_musculus 0 647
ENSMUST00000183181 Rbm25-016 retained_intron Mus_musculus 0 619
ENSMUST00000183128 Rbm25-013 retained_intron Mus_musculus 0 444
ENSMUST00000182036 Rbm25-009 protein_coding Mus_musculus 0 444
ENSMUST00000182618 Rbm25-012 protein_coding Mus_musculus 0 444
ENSMUST00000182840 Rbm25-015 processed_transcript Mus_musculus 0 442
ENSMUST00000183039 Rbm25-021 processed_transcript Mus_musculus 0 379
ENSMUST00000182004 Rbm25-007 protein_coding Mus_musculus 0 353
ENSMUST00000183154 Rbm25-008 protein_coding Mus_musculus 0 351
ENSMUST00000182032 Rbm25-005 retained_intron Mus_musculus 0 207
ENSMUST00000182347 Rbm25-011 protein_coding Mus_musculus 0.000000000000005 88

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